PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0459

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 884aa MW: 98179.5 Da PI: 8.6766

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0459	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.1	4.1e-22	792	872	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt +ev++Li++r e+++r+ k +++lWee+s+ + + g++rsp+qCk++w +l ++y++i+ +k++ + +pyf++++ Gh_A07G0459 792 KWTSEEVKKLIKMRGELHSRFHVVKGRMALWEEISASLLADGISRSPVQCKSRWASLVQKYEEIRSEKKSH-----KDWPYFEEMN 872 7***************************************************************99996.....68*****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	3.4E-68	76	326	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	8.45E-73	77	491	IPR001279	Metallo-beta-lactamase
SMART	SM00849	9.7E-28	89	286	IPR001279	Metallo-beta-lactamase
Pfam	PF12706	6.2E-11	101	236	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	5.2E-6	430	463	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profile	PS50090	9.117	785	849	IPR017877	Myb-like domain
SuperFamily	SSF46689	6.12E-6	788	851	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-7	788	851	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-5	789	851	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-19	790	874	No hit	No description
CDD	cd12203	2.48E-21	791	856	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MAASTALSLC PYILSRRPTP RKRRFSCSVG STTPIGTRRT NVPRRSSGRL DGARKSMEDS 60 VQRKMEQFYE GTAGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK 120 IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDP HTPIYASSFT MELIKKRLKE 180 NGIFVPSRLK VFKMRKRFAA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES 240 PLDGNIFDRQ FLEDLSKEGV TLMMSDSTNV LSPGRTTSER VVADALLRHI SNAKGRIITT 300 QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKAEDIDAYA 360 PKDLIIVTTG SQAEPRAALN LASYGSSHSF KLNKEDVILY SAKVIPGNES RVMKMLNRIS 420 EIGSTIVMGR NEGLHTSGHG YRGELEEVLK IVKPQHFLPI HGELVFLKEH ELLGKSTGVR 480 HTTVIKNGEM LGVSHLRNRK VLSNGFSSLG KENLLLMYSD GDKAFGTSTE LCIDERLRIA 540 SDGIIVVSME ILRPQKIDGI IENSLKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPV 600 NCPLAHMERT VSEVLRKMVR KYSGKRPEVI AIALENPAGV LSDELNEKLS GNSNVGFGIP 660 AVRKVMDGHP KRREPNKIKA ENDGNLHIEN TSEQNLIVGN DVETFLPEEV TTSSSPDHAE 720 RHTHSTEDSD EFWKPFIKSS SPIDNLENDN NGFIPIEEHK SELKSDDAAS SGDVSELPSS 780 QLKSSKPAKR NKWTSEEVKK LIKMRGELHS RFHVVKGRMA LWEEISASLL ADGISRSPVQ 840 CKSRWASLVQ KYEEIRSEKK SHKDWPYFEE MNKILSDDFE AAAT

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MAASTALSLC PYILSRRPTP RKRRFSCSVG STTPIGTRRT NVPRRSSGRL DGARKSMEDS  60
VQRKMEQFYE GTAGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK  120
IIPDTTFIKK WSHKIEAVVI THGHEDHIGA LPWVIPALDP HTPIYASSFT MELIKKRLKE  180
NGIFVPSRLK VFKMRKRFAA GPFEIEPLRV THSIPDCCGL VLRCADGTIL HTGDWKIDES  240
PLDGNIFDRQ FLEDLSKEGV TLMMSDSTNV LSPGRTTSER VVADALLRHI SNAKGRIITT  300
QFASNIHRLG SVKAAADLTG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL VKAEDIDAYA  360
PKDLIIVTTG SQAEPRAALN LASYGSSHSF KLNKEDVILY SAKVIPGNES RVMKMLNRIS  420
EIGSTIVMGR NEGLHTSGHG YRGELEEVLK IVKPQHFLPI HGELVFLKEH ELLGKSTGVR  480
HTTVIKNGEM LGVSHLRNRK VLSNGFSSLG KENLLLMYSD GDKAFGTSTE LCIDERLRIA  540
SDGIIVVSME ILRPQKIDGI IENSLKGKIR ITTRCLWLDK GKLLDALHKA AHAALSSCPV  600
NCPLAHMERT VSEVLRKMVR KYSGKRPEVI AIALENPAGV LSDELNEKLS GNSNVGFGIP  660
AVRKVMDGHP KRREPNKIKA ENDGNLHIEN TSEQNLIVGN DVETFLPEEV TTSSSPDHAE  720
RHTHSTEDSD EFWKPFIKSS SPIDNLENDN NGFIPIEEHK SELKSDDAAS SGDVSELPSS  780
QLKSSKPAKR NKWTSEEVKK LIKMRGELHS RFHVVKGRMA LWEEISASLL ADGISRSPVQ  840
CKSRWASLVQ KYEEIRSEKK SHKDWPYFEE MNKILSDDFE AAAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	1e-87	77	635	19	560	RIBONUCLEASE J
5a0t_B	1e-87	77	635	19	560	RIBONUCLEASE J
5a0v_A	1e-87	77	635	19	560	RIBONUCLEASE J
5a0v_B	1e-87	77	635	19	560	RIBONUCLEASE J
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15900	1e-127	stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109841474	1e-127

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468135.1	0.0	PREDICTED: uncharacterized protein LOC105786301
Refseq	XP_012468148.1	0.0	PREDICTED: uncharacterized protein LOC105786301
TrEMBL	A0A0B0P255	0.0	A0A0B0P255_G
STRING	VIT_17s0000g01640.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9539	26	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein